../../tmp/servers/virsirnadb/1732680193
Result for your query siRNA sequence
| RED | =100 % Complementary sequence |
| . | =Identical residue |
| blue alphabets | =mismatch |
| _ | =Gap |
| Acc number | Strain name | Start | Alignment | End | % Identity |
| Query | virsi2032 | 1 | ccagacacatactcctcag | 19 | |
| L24917.1 | HRVPP Human rhinovirus type 16 polyprotein gene, complete CDS | 2153 | ................... | 2171 | 100 |
| FJ445158.1 | Human rhinovirus 81 isolate F06, complete genome | 2145 | ................... | 2163 | 100 |
| FJ445158.1 | Human rhinovirus 81 isolate F06, complete genome | 990 | ..........ca.._____ | 1003 | 63 |
| FJ445159.1 | Human rhinovirus 81 isolate F07, complete genome | 2145 | ................... | 2163 | 100 |
| FJ445159.1 | Human rhinovirus 81 isolate F07, complete genome | 990 | ..........ca.._____ | 1003 | 63 |
| FJ445157.1 | Human rhinovirus 81 strain ATCC VR-1191, complete genome | 2145 | ...........t...y... | 2163 | 89 |
| FJ445173.1 | Human rhinovirus 98 strain ATCC VR-1298, complete genome | 2150 | ..............tg... | 2168 | 89 |
| DQ473502.1 | Human rhinovirus 76, complete genome | 2150 | ..............t.___ | 2165 | 78 |
| FJ445182.1 | Human rhinovirus 76 strain ATCC VR-1186, complete genome | 2149 | ..............t.___ | 2164 | 78 |
| DQ473508.1 | Human rhinovirus 28, complete genome | 2155 | .............._____ | 2168 | 73 |
| DQ473508.1 | Human rhinovirus 28, complete genome | 6533 | ...........________ | 6543 | 57 |
| FJ445147.1 | Human rhinovirus 65 strain ATCC VR-1175, complete genome | 2154 | .............._____ | 2167 | 73 |
| GU219984.1 | Human rhinovirus C strain HRV-C15 isolate W10, complete genome | 2369 | .........a.ac...... | 2387 | 84 |
| DQ473495.1 | Human rhinovirus 38, complete genome | 2141 | ..t...........a.t.. | 2159 | 84 |
| DQ473495.1 | Human rhinovirus 38, complete genome | 983 | ..........ct...____ | 997 | 68 |
| DQ473504.1 | Human rhinovirus 88, complete genome | 2161 | ..t...........t..t. | 2179 | 84 |
| FJ445121.1 | Human rhinovirus 21 strain ATCC VR-1131, complete genome | 2148 | .....t.ag.......... | 2166 | 84 |
| FJ445135.1 | Human rhinovirus 50 strain ATCC VR-517, complete genome | 2132 | ..t...........t.t.. | 2150 | 84 |
| FJ445140.1 | Human rhinovirus 56 strain ATCC VR-1166, complete genome | 2153 | ..t...........ag... | 2171 | 84 |
| FJ445180.1 | Human rhinovirus 38 strain ATCC VR-1148, complete genome | 2141 | ..t...........a.t.. | 2159 | 84 |
| FJ445180.1 | Human rhinovirus 38 strain ATCC VR-1148, complete genome | 983 | ..........ct...____ | 997 | 68 |
| DQ473490.1 | Human rhinovirus 4, complete genome | 2144 | ............a..____ | 2158 | 73 |
| DQ473490.1 | Human rhinovirus 4, complete genome | 4294 | ___..........______ | 4285 | 52 |
| EF173414.1 | Human rhinovirus 11, complete genome | 2143 | .....t.........____ | 2157 | 73 |
| EF173414.1 | Human rhinovirus 11, complete genome | 282 | ...ac........._____ | 269 | 63 |
| FJ445146.1 | Human rhinovirus 63 strain ATCC VR-1173, complete genome | 991 | ..........c....____ | 1005 | 73 |
| FJ445130.1 | Human rhinovirus 42 strain ATCC VR-338, complete genome | 2151 | ............a._____ | 2164 | 68 |
| FJ445137.1 | Human rhinovirus 52 isolate F10, complete genome | 2149 | ............a._____ | 2162 | 68 |
| FJ445129.1 | Human rhinovirus 40 strain ATCC VR-341, complete genome | 2155 | ............a._____ | 2168 | 68 |
| GQ415051.1 | Human rhinovirus A isolate hrv-A101, complete genome | 988 | ..........c..._____ | 1001 | 68 |
| DQ875932.2 | Human rhinovirus C strain NY-074 polyprotein gene, complete cds | 2346 | .........c.gg.a.... | 2364 | 78 |
| NC_009996.1 | Human rhinovirus C, complete genome | 1719 | _..c.a.........a.._ | 1735 | 73 |
| EF173423.1 | Human rhinovirus 37, complete genome | 6424 | ..........t..gg..__ | 6440 | 73 |
| EF173420.1 | Human rhinovirus 17, complete genome | 2143 | ..t.........a..____ | 2157 | 68 |
| EF173420.1 | Human rhinovirus 17, complete genome | 6436 | .........._________ | 6445 | 52 |
| FJ445124.1 | Human rhinovirus 26 strain ATCC VR-1136, complete genome | 2151 | ..g.........a..____ | 2165 | 68 |
| FJ445134.1 | Human rhinovirus 49 isolate F04, complete genome | 988 | ..........ct...____ | 1002 | 68 |
| EF186077.1 | Human rhinovirus QPM polyprotein gene, complete cds | 1495 | ______.........c... | 1507 | 63 |
| EF582387.1 | Human rhinovirus C strain 026, complete genome | 1666 | ______.........c... | 1678 | 63 |
| EF173419.1 | Human rhinovirus 94, complete genome | 5525 | ______..........t.. | 5537 | 63 |
| FJ445185.1 | Human rhinovirus 94 strain ATCC VR-1295, complete genome | 5525 | ______..........t.. | 5537 | 63 |
| FJ445112.1 | Human rhinovirus 5 strain ATCC VR-485, complete genome | 2150 | ...........________ | 2160 | 57 |
| FJ445164.1 | Human rhinovirus 86 strain ATCC VR-1196, complete genome | 2156 | ...........________ | 2166 | 57 |
| DQ473492.1 | Human rhinovirus 73, complete genome | 6540 | __...........______ | 6550 | 57 |
| FJ445117.1 | Human rhinovirus 13 isolate F03, complete genome | 6541 | __...........______ | 6551 | 57 |
| DQ473489.1 | Human rhinovirus 70, complete genome | 6440 | ..........tt.gg..._ | 6457 | 73 |
| FJ445168.1 | Human rhinovirus 91 strain ATCC VR-1292, complete genome | 1251 | _.........t.c.t..t. | 1234 | 73 |
| FJ445168.1 | Human rhinovirus 91 strain ATCC VR-1292, complete genome | 2145 | ..t.........a._____ | 2158 | 63 |
| FJ445168.1 | Human rhinovirus 91 strain ATCC VR-1292, complete genome | 6438 | .........._________ | 6447 | 52 |
| DQ473500.1 | Human rhinovirus 59, complete genome | 984 | ..........ca.._____ | 997 | 63 |
| DQ473500.1 | Human rhinovirus 59, complete genome | 6980 | __.........._______ | 6989 | 52 |
| EF173416.1 | Human rhinovirus 24, complete genome | 284 | ...ac........._____ | 271 | 63 |
| EF173416.1 | Human rhinovirus 24, complete genome | 3098 | __.t.........._____ | 3109 | 57 |
| FJ445190.1 | Human rhinovirus 24 strain ATCC VR-1134, complete genome | 284 | ...ac........._____ | 271 | 63 |
| FJ445190.1 | Human rhinovirus 24 strain ATCC VR-1134, complete genome | 3098 | __.t.........._____ | 3109 | 57 |
| EU840952.2 | Human rhinovirus C strain CL-170085, complete genome | 5908 | ____..........a.___ | 5897 | 57 |
| EF173421.1 | Human rhinovirus 27, complete genome | 1269 | ..........c._______ | 1280 | 57 |
| FJ445186.1 | Human rhinovirus 27 strain ATCC VR-1137, complete genome | 1269 | ..........c._______ | 1280 | 57 |
| DQ473491.1 | Human rhinovirus 41, complete genome | 5767 | ____.t..........___ | 5778 | 57 |
| DQ473505.1 | Human rhinovirus 36, complete genome | 2019 | _____..t.........__ | 2030 | 57 |
| DQ473506.1 | Human rhinovirus 46, complete genome | 2006 | _____..t.........__ | 2017 | 57 |
| FJ445113.1 | Human rhinovirus 8 strain ATCC VR-1118, complete genome | 6823 | .........c.._______ | 6834 | 57 |
| FJ445170.1 | Human rhinovirus 95 strain ATCC VR-1301, complete genome | 6825 | .........c.._______ | 6836 | 57 |
| DQ473486.1 | Human rhinovirus 6, complete genome | 1000 | .........._________ | 1009 | 52 |
| EF173425.1 | Human rhinovirus 93, complete genome | 1001 | .........._________ | 1010 | 52 |
| FJ445155.1 | Human rhinovirus 79 strain ATCC VR-1189, complete genome | 997 | .........._________ | 1006 | 52 |
| DQ473497.1 | Human rhinovirus 23, complete genome | 1330 | _________.......... | 1321 | 52 |
| FJ445120.1 | Human rhinovirus 20 strain ATCC VR-1130, complete genome | 3016 | _..........________ | 3025 | 52 |
| FJ445150.1 | Human rhinovirus 68 strain ATCC VR-1178, complete genome | 3017 | _..........________ | 3026 | 52 |
| GQ415052.1 | Human rhinovirus A isolate hrv-A101-v1, complete genome | 1408 | _________.......... | 1399 | 52 |
| GQ415052.1 | Human rhinovirus A isolate hrv-A101-v1, complete genome | 6633 | __.........._______ | 6642 | 52 |